VIRsiRNAdb

../../tmp/servers/virsirnadb/1941909291
Result for your query siRNA sequence

RED	=100 % Complementary sequence
.	=Identical residue
blue alphabets	=mismatch
_	=Gap

Acc number	Strain name	Start	Alignment	End	% Identity
Query	virsi1282	1	`gaagggatggtattggaaa`	19
EU262658.1	Human coxsackievirus A16 strain shzh05-1, complete genome	1177	`...................`	1195	100
AF177911.1	Coxsackievirus A16 polyprotein gene, complete cds	1178	`_..................`	1195	94
AY790926.1	Human coxsackievirus A16 strain shzh00-1, complete genome	1178	`_..................`	1195	94
DQ341360.1	Human enterovirus 71 isolate J115-MAL-01, complete genome	1176	`_..................`	1193	94
FJ198212.1	Human coxsackievirus A16 strain GZ08, complete genome	1178	`_..................`	1195	94
GQ279368.1	Human coxsackievirus A16 strain SZ/HK08-3, complete genome	1178	`_..................`	1195	94
AB550340.1	Human enterovirus 71 genomic RNA, complete genome, strain: KED005-org	1177	`_..................`	1194	94
AB550341.1	Human enterovirus 71 genomic RNA, complete genome, strain: KED005-LPS	1177	`_..................`	1194	94
AB575935.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 480	1121	`_..................`	1138	94
HQ423141.1	Human coxsackievirus A16 strain KMM/08, complete genome	1178	`_..................`	1195	94
EU812514.1	Human coxsackievirus A16 strain FY18 from China, complete genome	1183	`............c......`	1201	94
AY421766.1	Human coxsackievirus A8 strain Donovan, complete genome	1176	`_................._`	1192	89
FJ461781.1	Human enterovirus 71 isolate NUH0083/SIN/08, complete genome	1144	`_................._`	1160	89
FJ606447.1	Human enterovirus 71 strain BJ08-Z004-3, complete genome	1175	`_................._`	1191	89
HM002488.1	Human enterovirus 71 strain BJ366, complete genome	1175	`_................._`	1191	89
HQ407557.1	Human enterovirus 71 strain LN009, complete genome	1175	`_................._`	1191	89
HQ426649.1	Human enterovirus 71 strain 2010FJLY008, complete genome	1173	`_................._`	1189	89
AY421765.1	Human coxsackievirus A7 strain Parker, complete genome	1175	`_.....g............`	1192	89
AY421768.1	Human coxsackievirus A12 strain Texas-12, complete genome	1178	`_.....t............`	1195	89
AY697458.1	Human enterovirus 76 polyprotein gene, complete cds	1189	`_...........c......`	1206	89
AY697458.1	Human enterovirus 76 polyprotein gene, complete cds	2635	`_______..........._`	2625	57
AB192877.1	Human enterovirus 90 genomic RNA, complete genome	1182	`_..a...............`	1199	89
DQ341355.1	Human enterovirus 71 isolate 06-KOR-00, complete genome	1177	`_...........c......`	1194	89
DQ341356.1	Human enterovirus 71 isolate 03-KOR-00, complete genome	1177	`_...........c......`	1194	89
DQ341358.1	Human enterovirus 71 isolate S40221-SAR-00, complete genome	1177	`_.....g............`	1194	89
DQ341359.1	Human enterovirus 71 isolate S10862-SAR-98, complete genome	1177	`_.....g............`	1194	89
DQ341361.1	Human enterovirus 71 isolate 1M-AUS-12-00, complete genome	1177	`_...........c......`	1194	89
EF063152.1	Human enterovirus 71 strain E2005125-TW polyprotein gene, complete cd	1177	`_..a...............`	1194	89
EF373575.1	Human enterovirus 71 strain E2002042-TW-CDC polyprotein gene, complet	1181	`_.....g............`	1198	89
EF667343.1	Simian enterovirus 46 strain RNM5, complete genome	1163	`_...........c......`	1180	89
GQ279369.1	Human enterovirus 71 strain SZ/HK08-5, complete genome	1175	`_...........c......`	1192	89
GQ279371.1	Human coxsackievirus A16 strain SZ/HK08-7, complete genome	1178	`_.....t............`	1195	89
AB575936.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 961	1116	`_..a...............`	1133	89
AB575937.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 141	1089	`_...........c......`	1106	89
AB575938.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 100	1150	`_...........c......`	1167	89
AY421761.1	Human coxsackievirus A3 strain Olson, complete genome	1174	`...a..g............`	1192	89
AF302996.1	Enterovirus 71 strain SHZH98 polyprotein gene, complete cds	1176	`_...........c....._`	1192	84
AF316321.2	Enterovirus 5865/sin/000009, complete genome	1179	`_.....g..........._`	1195	84
AF352027.1	Enterovirus 5666/sin/002209, complete genome	1179	`_.....g..........._`	1195	84
AY465356.1	Human enterovirus 71 strain SHZH03, complete genome	1175	`_...........c....._`	1191	84
AY421763.1	Human coxsackievirus A5 strain Swartz, complete genome	1174	`_.....g..........._`	1190	84
AJ586873.1	Human enterovirus 71 gene for polyprotein, isolate EV71/9/97/SHA89	1179	`_.....g..........._`	1195	84
AY773285.1	Human enterovirus 90 isolate F950027, complete genome	1181	`_..a.............._`	1197	84
DQ133458.1	Human enterovirus 71 strain 984 polyprotein gene, complete cds	1175	`_...........c....._`	1191	84
DQ341354.1	Human enterovirus 71 isolate 3799-SIN-98, complete genome	1180	`_.....g..........._`	1196	84
DQ341362.1	Human enterovirus 71 isolate SB12736-SAR-03, complete genome	1180	`_.....g..........._`	1196	84
DQ341363.1	Human enterovirus 71 isolate S19841-SAR-03, complete genome	1180	`_.....g..........._`	1196	84
DQ341364.1	Human enterovirus 71 isolate 5511-SIN-00, complete genome	1180	`_.....g..........._`	1196	84
DQ341365.1	Human enterovirus 71 isolate PP37-MAL-01, complete genome	1179	`_.....g..........._`	1195	84
DQ341366.1	Human enterovirus 71 isolate SB2864-SAR-00, complete genome	1179	`_.....g..........._`	1195	84
DQ341367.1	Human enterovirus 71 isolate MY821-3-SAR-97, complete genome	1179	`_.....g..........._`	1195	84
DQ341368.1	Human enterovirus 71 isolate MY104-9-SAR-97, complete genome	1179	`_.....g..........._`	1195	84
DQ452074.1	Human enterovirus 71 strain 804/NO/03, complete genome	1178	`_...........c....._`	1194	84
AM396586.1	Human enterovirus 71 gene for polyprotein, genomic RNA, isolate EV71/	1179	`_.....g..........._`	1195	84
AM396587.1	Human enterovirus 71 gene for polyprotein, genomic RNA, isolate UH1/P	1179	`_.....g..........._`	1195	84
AM396588.1	Human enterovirus 71 gene for polyprotein, genomic RNA, isolate EV71/	1170	`_.....g..........._`	1186	84
EF373576.1	Human enterovirus 71 strain E2004104-TW-CDC polyprotein gene, complet	1175	`_...........c....._`	1191	84
EU131776.1	Human enterovirus 71 strain N3340-TW-02, complete genome	1175	`_...........c....._`	1191	84
EU364841.1	Human enterovirus 71 strain 26M/AUS/4/99, complete genome	1180	`_.....g..........._`	1196	84
EU376004.1	Human enterovirus 71 26M/AUS/4/99 CHO cell-adapted, complete genome	1180	`_.....g..........._`	1196	84
EU376005.1	Human enterovirus 71 26M/AUS/4/99 mouse-adapted, complete genome	1180	`_.....g..........._`	1196	84
EU703812.1	Human enterovirus 71 strain EV71/Fuyang.Anhui.P.R.C/17.08/1, complete	1175	`_...........c....._`	1191	84
EU703813.1	Human enterovirus 71 strain EV71/Fuyang.Anhui.P.R.C/17.08/2, complete	1175	`_...........c....._`	1191	84
EU703814.1	Human enterovirus 71 strain EV71/Fuyang.Anhui.P.R.C/17.08/3, complete	1175	`_...........c....._`	1191	84
EU864507.1	Human enterovirus 71 isolate EV71/Zhejiang08, complete genome	1176	`_...........c....._`	1192	84
FJ158600.1	Human enterovirus 71 isolate DTID/ZJU-62, complete genome	1175	`_...........c....._`	1191	84
FJ158601.1	Human enterovirus 71 isolate DTID/ZJU-74, complete genome	1175	`_...........c....._`	1191	84
FJ194964.1	Human enterovirus 71 strain EV71/GDFS/3/2008, complete genome	1175	`_...........c....._`	1191	84
FJ194965.1	Human enterovirus 71 strain EV71/GDSG/17/2008, complete genome	1175	`_...........c....._`	1191	84
AB469182.1	Human enterovirus 71 gene for polyprotein, complete cds, strain: SK-E	1178	`_.....g..........._`	1194	84
AB469183.1	Human enterovirus 71 gene for polyprotein, complete cds, strain: EV71	1913	`_.....g..........._`	1929	84
FJ360544.1	Human enterovirus 71 isolate GZ-08-01, complete genome	1174	`_...........c....._`	1190	84
FJ360546.1	Human enterovirus 71 isolate GZ-08-03, complete genome	1174	`_...........c....._`	1190	84
FJ439769.1	Human enterovirus 71 strain Fuyang-0805, complete genome	1175	`_...........c....._`	1191	84
FJ606448.1	Human enterovirus 71 strain BJ08-Z011-4, complete genome	1175	`_...........c....._`	1191	84
FJ606449.1	Human enterovirus 71 strain BJ08-Z020-1, complete genome	1175	`_...........c....._`	1191	84
FJ607334.1	Human enterovirus 71 strain 1/SHENZHEN/08/China/HFMD/2008, complete g	1174	`_...........c....._`	1190	84
FJ607335.1	Human enterovirus 71 strain 4/SHENZHEN/08/China/HFMD/2008, complete g	1174	`_...........c....._`	1190	84
FJ607338.1	Human enterovirus 71 strain 605/SHENZHEN/08/China/HFMD Severe/2008, c	1174	`_...........c....._`	1190	84
GQ892830.1	Human enterovirus 71 strain GX/LZ 08-04/08/CHN, complete genome	1175	`_...........c....._`	1191	84
GQ994988.1	Human enterovirus 71 strain Anhui1-09-China, complete genome	1175	`_...........c....._`	1191	84
GQ994990.1	Human enterovirus 71 strain Chongqing2-09-China, complete genome	1175	`_...........c....._`	1191	84
GQ994991.1	Human enterovirus 71 strain Chongqing3-09-China, complete genome	1175	`_...........c....._`	1191	84
GQ994992.1	Human enterovirus 71 strain Henan2-09-China, complete genome	1167	`_...........c....._`	1183	84
GU196833.1	Human enterovirus 71 strain Henan1-09-China polyprotein gene, complet	987	`_...........c....._`	1003	84
GU366191.1	Human enterovirus 71 strain Henan10-08-China, complete genome	1175	`_...........c....._`	1191	84
GU396280.1	Human enterovirus 71 isolate EV71/Lanzhou01, complete genome	1175	`_...........c....._`	1191	84
GU459070.1	Human enterovirus 71 isolate FY23-K12, complete genome	1178	`_...........c....._`	1194	84
GU459071.1	Human enterovirus 71 isolate FY23-K14, complete genome	1175	`_...........c....._`	1191	84
HM003207.1	Human enterovirus 71 strain 87-2008 Xi'an Shaanxi, complete genome	1175	`_...........c....._`	1191	84
GQ279370.1	Human enterovirus 71 strain SZ/HK08-6, complete genome	1175	`_...........c....._`	1191	84
HM002484.1	Human enterovirus 71 strain BJ67, complete genome	1175	`_.....g..........._`	1191	84
HM002489.1	Human enterovirus 71 strain BJ398, complete genome	1176	`_...........c....._`	1192	84
HM053669.1	Human enterovirus 71 strain BJ293, complete genome	1175	`_...........c....._`	1191	84
HM053670.1	Human enterovirus 71 strain BJ393, complete genome	1175	`_...........c....._`	1191	84
AB550334.1	Human enterovirus 71 genomic RNA, complete genome, strain: SK-EV006-o	1178	`_.....g..........._`	1194	84
AB550335.1	Human enterovirus 71 genomic RNA, complete genome, strain: SK-EV006-L	1178	`_.....g..........._`	1194	84
AB550336.1	Human enterovirus 71 genomic RNA, complete genome, strain: C7/Osaka-o	1180	`_.....g..........._`	1196	84
AB550337.1	Human enterovirus 71 genomic RNA, complete genome, strain: C7/Osaka-L	1180	`_.....g..........._`	1196	84
AB550338.1	Human enterovirus 71 genomic RNA, complete genome, strain: 75-Yamagat	1174	`_...........c....._`	1190	84
AB550339.1	Human enterovirus 71 genomic RNA, complete genome, strain: 75-Yamagat	1174	`_...........c....._`	1190	84
HQ188292.1	Human enterovirus 71 strain Fuyang-0805a, complete genome	1178	`_...........c....._`	1194	84
HQ325852.1	Human enterovirus 71 strain EV71/HENAN/DC/2010, complete genome	1176	`_...........c....._`	1192	84
HQ891923.1	Human enterovirus 71 strain Shanghai 27-2009, complete genome	1176	`_...........c....._`	1192	84
HQ891924.1	Human enterovirus 71 strain Shanghai 28-2009, complete genome	1176	`_...........c....._`	1192	84
HQ891925.1	Human enterovirus 71 strain Shanghai 36-2009, complete genome	1177	`_...........c....._`	1193	84
HQ891926.1	Human enterovirus 71 strain Shanghai 51-2009, complete genome	1177	`_...........c....._`	1193	84
HQ891927.1	Human enterovirus 71 strain Shanghai 64-2009, complete genome	1176	`_...........c....._`	1192	84
HQ891928.1	Human enterovirus 71 strain Shanghai 117-2009, complete genome	1176	`_...........c....._`	1192	84
HQ891929.1	Human enterovirus 71 strain Shanghai 118-2009, complete genome	1176	`_...........c....._`	1192	84
HQ400942.1	Human enterovirus 71 HZ08/Hangzhou/2008, complete genome	1175	`_...........c....._`	1191	84
HQ423142.1	Human enterovirus 71 strain KMM/09, complete genome	1175	`_...........c....._`	1191	84
HQ423143.1	Human enterovirus 71 strain KM186/09, complete genome	1175	`_...........c....._`	1191	84
HQ456305.1	Human enterovirus A strain GZ2010-156, complete genome	1175	`_...........c....._`	1191	84
HQ456306.1	Human enterovirus A strain GZ2010-134, complete genome	1175	`_...........c....._`	1191	84
HQ456307.1	Human enterovirus A strain GZ2010-120, complete genome	1175	`_...........c....._`	1191	84
HQ456308.1	Human enterovirus A strain GZ2010-118, complete genome	1175	`_...........c....._`	1191	84
HQ456309.1	Human enterovirus A strain GZ08-831, complete genome	1175	`_...........c....._`	1191	84
HQ456310.1	Human enterovirus A strain GZ08-530, complete genome	1175	`_...........c....._`	1191	84
HQ456311.1	Human enterovirus A strain GZ08-522, complete genome	1175	`_...........c....._`	1191	84
HQ456312.1	Human enterovirus A strain GZ08-520, complete genome	1175	`_...........c....._`	1191	84
HQ611148.1	Human enterovirus 71 strain AH08/06, complete genome	1175	`_...........c....._`	1191	84
JN001860.1	Human enterovirus 71 strain NB/2010/01, complete genome	1176	`_...........c....._`	1192	84
AF499642.1	Human coxsackievirus A20 strain IH35, complete genome	1177	`_..........gg......`	1194	84
AF465514.1	Human coxsackievirus A20 strain IH Pool 35, complete genome	1177	`_..........gg......`	1194	84
FJ914252.2	Human poliovirus 3 strain SWI10947, complete genome	1179	`_..........gg......`	1196	84
AY421762.1	Human coxsackievirus A4 strain High Point, complete genome	1180	`_..a..t............`	1197	84
AY697460.1	Human enterovirus 90 polyprotein gene, complete cds	1182	`_..a..g............`	1199	84
EF667344.1	Human enterovirus 92 strain RJG7, complete genome	1135	`_..a..t............`	1152	84
HQ269389.1	Human coxsackievirus A16 isolate XM-CA16-3560, complete genome	1179	`_..a..t............`	1196	84
AY421767.1	Human coxsackievirus A10 strain Kowalik, complete genome	1180	`____.............._`	1193	73
AF499640.1	Human coxsackievirus A18 strain G13, complete genome	1177	`_..........gg....._`	1193	78
AF465513.1	Human coxsackievirus A18 strain G-13, complete genome	1177	`_..........gg....._`	1193	78
DQ358078.1	Human coxsackievirus A20 serotype CAV20a, complete genome	1182	`_..........gg....._`	1198	78
AY843298.1	Human enterovirus 80 strain USA/CA67-10387, complete genome	1177	`__.........gg......`	1193	78
AY421760.1	Human coxsackievirus A2 strain Fleetwood, complete genome	1175	`_..a..t..........._`	1191	78
EU812515.1	Human enterovirus 71 strain FY23 from China, complete genome	1178	`_...........cc...._`	1194	78
HM053671.1	Human enterovirus 71 strain BJ462, complete genome	1175	`_...........c.a..._`	1191	78
AY697459.1	Human enterovirus 89 polyprotein gene, complete cds	1183	`____..t............`	1197	73
AY278551.1	Human poliovirus 2 isolate P2S/Mog66-4 (21043), complete genome	6735	`_____............g.`	6748	68
AF499641.1	Human coxsackievirus A19 strain 8663, complete genome	3106	`_____..........a.._`	3094	63
AY560657.1	Human poliovirus 1 strain Brunhilde, complete genome	6741	`______...........g.`	6753	63
S76772.1	polyprotein [Coxsackie B4 virus CB4, host=mice, E2, originally derive	5145	`...........________`	5155	57
AF230973.1	AF230973 Enterovirus Yanbian 96-83csf, complete genome	5148	`...........________`	5158	57
AF311939.1	Human coxsackievirus B4 strain E2 variant, complete genome	5145	`...........________`	5155	57
AY302542.1	Human echovirus 16 strain Harrington complete genome	5182	`...........________`	5192	57
AY302546.1	Human echovirus 20 strain JV-1 complete genome	5143	`...........________`	5153	57
EF371880.2	Human enterovirus B isolate SE-03-78616, complete genome	3063	`__...........______`	3073	57
FJ000001.1	Human coxsackievirus B3 strain Fuyang19, complete genome	5148	`...........________`	5158	57
GQ141875.1	Human coxsackievirus B3 strain Beijing0811, complete genome	5150	`...........________`	5160	57
AB501329.1	Human echovirus 13 gene for polyprotein, complete cds, strain: 2002-2	5159	`...........________`	5169	57
AB501330.1	Human echovirus 13 gene for polyprotein, complete cds, strain: 2002-2	5159	`...........________`	5169	57
AB501331.1	Human echovirus 13 gene for polyprotein, complete cds, strain: I5(1)-	5159	`...........________`	5169	57
AB501332.1	Human echovirus 13 gene for polyprotein, complete cds, strain: S3(1)-	5159	`...........________`	5169	57
HM185055.1	Human echovirus 6 strain Echo6/Henan/116/2008, complete genome	5168	`...........________`	5178	57
HM185056.1	Human enterovirus B strain EVB/Henan/127/2008, complete genome	5145	`...........________`	5155	57

VIRsiRNAdb

Database of Viral siRNA / shRNA